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General
Installation
API
liana.mt.cellchat.__call__
liana.mt.cellphonedb.__call__
liana.mt.connectome.__call__
liana.mt.logfc.__call__
liana.mt.natmi.__call__
liana.mt.singlecellsignalr.__call__
liana.mt.geometric_mean.__call__
liana.mt.scseqcomm.__call__
liana.mt.rank_aggregate.__call__
liana.mt.show_methods
liana.mt.get_method_scores
liana.mt.process_scores
liana.mt.AggregateClass
liana.mt.aggregate_meta
liana.mt.bivariate.__call__
liana.mt.compute_global_specificity
liana.mt.cross_pcf.__call__
liana.mt.lric.__call__
liana.mt.inflow.__call__
liana.mt.get_lric_auc
liana.mt.get_lric_divergence
liana.mt.MistyData
liana.mt.MistyData.__call__
liana.mt.genericMistyData
liana.mt.lrMistyData
liana.method.sp.SingleViewModel
liana.method.sp.LinearModel
liana.method.sp.RandomForestModel
liana.method.sp.RobustLinearModel
liana.mt.find_causalnet
liana.mt.estimate_metalinks
liana.mt.df_to_lr
liana.pp.obsm_to_adata
liana.pp.zi_minmax
liana.pp.neg_to_zero
liana.pp.spatial_neighbors
liana.pp.spatial_pair_proximity
liana.pp.expand_coordinates
liana.pp.query_bandwidth
liana.pp.interpolate_adata
liana.ms.to_tensor_c2c
liana.ms.adata_to_views
liana.ms.lrs_to_views
liana.ms.lrdata_to_mudata
liana.ms.filter_view_markers
liana.ms.nmf
liana.ms.estimate_elbow
liana.ms.get_factor_scores
liana.ms.get_variable_loadings
liana.ms.mdata_to_anndata
liana.rs.select_resource
liana.rs.show_resources
liana.rs.generate_lr_geneset
liana.rs.translate_resource
liana.rs.translate_column
liana.rs.get_hcop_orthologs
liana.rs.get_metalinks
liana.rs.describe_metalinks
liana.rs.get_metalinks_values
liana.rs.build_prior_network
liana.ds.kang_2018
liana.ds.kuppe_2022
liana.ds.citeseq_pbmc5k
liana.ds.vicari_2024
liana.ds.yao_2023
liana.ds.generate_toy_adata
liana.ds.generate_toy_spatial
liana.ds.generate_toy_mdata
liana.ds.sample_lrs
liana.pl.dotplot
liana.pl.dotplot_by_sample
liana.pl.tileplot
liana.pl.elbow
liana.pl.circle_plot
liana.pl.connectivity
liana.pl.misty_target_metrics
liana.pl.misty_contributions
liana.pl.misty_interactions
liana.pl.annulus
liana.pl.lric_lineplot
liana.pl.lric_divergence
liana.pl.feature_by_group
Changelog
Contributing guide
References
Gallery
Tutorials
Steady-state Ligand-Receptor inference
Prior Knowledge
Differential Expression Analysis for CCC & Downstream Signalling Networks
Comparative Cell-Cell Communication with LIANA+ and CrossTalkeR
Intercellular Context Factorization with MOFA
MOFAcellular - Multicellular Factor Analysis
Intercellular Context Factorization with Tensor-Cell2cell
Spatially-informed Bivariate Metrics
Learning Spatial Relationships with MISTy
Inferring Cell–Cell Interactions at Single Cell Resolution
Inflow & MOFA-Flex: Spatially-Resolved Cell-Cell Communication Programs
Ligand-Receptor Interaction Correlation (LRIC)
Multi-Modal Ligand-Receptor Inference
Integrating Multi-Modal Spatially-Resolved Technologies with LIANA+
About
About LIANA+
Citation
GitHub
Discourse
Repository
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