Index _ | A | B | C | D | E | F | G | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Y | Z _ __call__() (liana.mt.bivariate method) (liana.mt.cellchat method) (liana.mt.cellphonedb method) (liana.mt.connectome method) (liana.mt.cross_pcf method) (liana.mt.geometric_mean method) (liana.mt.inflow method) (liana.mt.logfc method) (liana.mt.lric method) (liana.mt.MistyData method) (liana.mt.natmi method) (liana.mt.rank_aggregate method) (liana.mt.scseqcomm method) (liana.mt.singlecellsignalr method) _SCORE (liana.mt.AggregateClass attribute) A adata_to_views() (in module liana.ms) add_cols (in module liana.mt) (liana.mt.AggregateClass attribute) aggregate_meta (in module liana.mt) AggregateClass (class in liana.mt) annulus() (in module liana.pl) axis (liana.mt.MistyData attribute) B build_prior_network() (in module liana.rs) by_sample() (liana.mt.AggregateClass method) C circle_plot() (in module liana.pl) citeseq_pbmc5k() (in module liana.ds) complex_cols (in module liana.mt) (liana.mt.AggregateClass attribute) compute_global_specificity() (in module liana.mt) connectivity() (in module liana.pl) copy() (liana.mt.MistyData method) D describe() (liana.mt.AggregateClass method) describe_metalinks() (in module liana.rs) df_to_lr() (in module liana.mt) dotplot() (in module liana.pl) dotplot_by_sample() (in module liana.pl) E elbow() (in module liana.pl) enforce_obs (liana.mt.MistyData attribute) estimate_elbow() (in module liana.ms) estimate_metalinks() (in module liana.mt) expand_coordinates() (in module liana.pp) F feature_by_group() (in module liana.pl) filename (liana.mt.MistyData attribute) filter_view_markers() (in module liana.ms) find_causalnet() (in module liana.mt) fit() (liana.method.sp.LinearModel method) (liana.method.sp.RandomForestModel method) (liana.method.sp.RobustLinearModel method) (liana.method.sp.SingleViewModel method) fun (in module liana.mt) G generate_lr_geneset() (in module liana.rs) generate_toy_adata() (in module liana.ds) generate_toy_mdata() (in module liana.ds) generate_toy_spatial() (in module liana.ds) genericMistyData() (in module liana.mt) get_factor_scores() (in module liana.ms) get_hcop_orthologs() (in module liana.rs) get_lric_auc() (in module liana.mt) get_lric_divergence() (in module liana.mt) get_meta() (liana.mt.AggregateClass method) get_metalinks() (in module liana.rs) get_metalinks_values() (in module liana.rs) get_method_scores() (in module liana.mt) get_variable_loadings() (in module liana.ms) get_weighted_matrix() (liana.mt.MistyData method) getdoc() (liana.method.sp.LinearModel method) (liana.method.sp.RandomForestModel method) (liana.method.sp.RobustLinearModel method) (liana.method.sp.SingleViewModel method) (liana.mt.AggregateClass method) (liana.mt.MistyData method) I importances (liana.method.sp.SingleViewModel attribute) interpolate_adata() (in module liana.pp) is_view (liana.mt.MistyData attribute) isbacked (liana.mt.MistyData attribute) K kang_2018() (in module liana.ds) kuppe_2022() (in module liana.ds) kwargs (liana.method.sp.SingleViewModel attribute) L liana.ds module liana.method.sp module liana.ms module liana.mt module liana.pl module liana.pp module liana.rs module LinearModel (class in liana.method.sp) lrdata_to_mudata() (in module liana.ms) lric_divergence() (in module liana.pl) lric_lineplot() (in module liana.pl) lrMistyData() (in module liana.mt) lrs_to_views() (in module liana.ms) M magnitude (in module liana.mt) magnitude_ascending (in module liana.mt) magnitude_specs (liana.mt.AggregateClass attribute) mdata_to_anndata() (in module liana.ms) method_name (in module liana.mt) methods (liana.mt.AggregateClass attribute) misty_contributions() (in module liana.pl) misty_interactions() (in module liana.pl) misty_target_metrics() (in module liana.pl) MistyData (class in liana.mt) mod (liana.mt.MistyData attribute) mod_names (liana.mt.MistyData attribute) model (liana.method.sp.SingleViewModel attribute) module liana.ds liana.method.sp liana.ms liana.mt liana.pl liana.pp liana.rs N n_mod (liana.mt.MistyData attribute) n_obs (liana.mt.MistyData attribute) n_var (liana.mt.MistyData attribute) n_vars (liana.mt.MistyData attribute) neg_to_zero() (in module liana.pp) nmf() (in module liana.ms) O obs (liana.mt.MistyData attribute) obs_keys() (liana.mt.MistyData method) obs_names (liana.mt.MistyData attribute) obs_names_make_unique() (liana.mt.MistyData method) obs_vector() (liana.mt.MistyData method) obsm (liana.mt.MistyData attribute) obsm_keys() (liana.mt.MistyData method) obsm_to_adata() (in module liana.pp) obsmap (liana.mt.MistyData attribute) obsp (liana.mt.MistyData attribute) P permute (in module liana.mt) predictions (liana.method.sp.SingleViewModel attribute) process_scores() (in module liana.mt) pull_obs() (liana.mt.MistyData method) pull_var() (liana.mt.MistyData method) push_obs() (liana.mt.MistyData method) push_var() (liana.mt.MistyData method) Q query_bandwidth() (in module liana.pp) R RandomForestModel (class in liana.method.sp) reference (in module liana.mt) RobustLinearModel (class in liana.method.sp) S sample_lrs() (in module liana.ds) seed (liana.method.sp.SingleViewModel attribute) select_resource() (in module liana.rs) shape (liana.mt.MistyData attribute) show_methods() (in module liana.mt) show_resources() (in module liana.rs) SingleViewModel (class in liana.method.sp) spatial_key (liana.mt.MistyData attribute) spatial_neighbors() (in module liana.pp) spatial_pair_proximity() (in module liana.pp) specificity (in module liana.mt) specificity_ascending (in module liana.mt) specificity_specs (liana.mt.AggregateClass attribute) strings_to_categoricals() (liana.mt.MistyData method) T tileplot() (in module liana.pl) to_anndata() (liana.mt.MistyData method) to_tensor_c2c() (in module liana.ms) translate_column() (in module liana.rs) translate_resource() (in module liana.rs) U uns (liana.mt.MistyData attribute) uns_keys() (liana.mt.MistyData method) update() (liana.mt.MistyData method) update_obs() (liana.mt.MistyData method) update_var() (liana.mt.MistyData method) V var (liana.mt.MistyData attribute) var_keys() (liana.mt.MistyData method) var_names (liana.mt.MistyData attribute) var_names_make_unique() (liana.mt.MistyData method) var_vector() (liana.mt.MistyData method) varm (liana.mt.MistyData attribute) varm_keys() (liana.mt.MistyData method) varmap (liana.mt.MistyData attribute) varp (liana.mt.MistyData attribute) vicari_2024() (in module liana.ds) view_names (liana.mt.MistyData attribute) W write() (liana.mt.MistyData method) write_h5mu() (liana.mt.MistyData method) write_zarr() (liana.mt.MistyData method) Y yao_2023() (in module liana.ds) Z zi_minmax() (in module liana.pp)
